Open Source

Open source projects I’ve been involved with.


dbverse

I am the creator and lead developer of dbverse, a metalibrary for large-scale scientific data analysis in a database.

Project Description Role Other References
dbverse GitHub Repo stars An ecosystem of database libraries for larger-than-memory scientific analytics. Creator Slides, Talk
dbMatrix GitHub Repo stars A database library for larger-than-memory matrix operations. Creator
dbSpatial GitHub Repo stars A database library for larger-than-memory spatial operations. Creator
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Giotto Suite

I am a core contributor and co-developer of Giotto Suite, a modular suite of R packages for multi-scale and multi-omic spatial analysis.

Project Description Role Other References
Giotto GitHub Repo stars Spatial omics analysis toolbox Core Contributor
GiottoClass GitHub Repo stars Giotto object and subobject class definitions and frameworks Core Contributor
GiottoUtils GitHub Repo stars GiottoUtils exports functionalities that are called internally by many of the other packages in the Giotto ecosystem Core Contributor
GiottoDB GitHub Repo stars GiottoDB contains classes from the dbverse for working with larger-than-memory spatial omics data Co-creator, Core Contributor
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Credit

This page is heavily inspired by the page of the same name by Hamel Husain.