Open Source

Open source projects I’ve been involved with.


dbverse

I am the creator and lead developer of dbverse, a metalibrary for large-scale scientific data analysis in a database.

Project Description Role Other References
dbverse GitHub Repo stars An ecosystem of database libraries for larger-than-memory scientific analytics. Creator Slides, Talk
dbMatrix GitHub Repo stars A database library for larger-than-memory matrix operations. Creator  
dbSpatial GitHub Repo stars A database library for larger-than-memory spatial operations. Creator  
dbProject GitHub Repo stars A database-backed framework for organizing and managing scientific analysis projects. Creator  
dbSequence GitHub Repo stars A database library for working with large-scale sequence data. Creator  
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Giotto Suite

I am a core contributor and co-developer of Giotto Suite, a modular suite of R packages for multi-scale and multi-omic spatial analysis.

Project Description Role Other References
Giotto GitHub Repo stars Spatial omics analysis toolbox Core Contributor  
GiottoClass GitHub Repo stars Giotto object and subobject class definitions and frameworks Core Contributor  
GiottoUtils GitHub Repo stars GiottoUtils exports functionalities that are called internally by many of the other packages in the Giotto ecosystem Core Contributor  
GiottoDB GitHub Repo stars GiottoDB contains classes from the dbverse for working with larger-than-memory spatial omics data Co-creator, Core Contributor  
GiottoSeq A Giotto Suite package for sequence data analysis. Core Contributor  
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Credit

This page is heavily inspired by the page of the same name by Hamel Husain.